STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3MYR9_ORYBREpimerase domain-containing protein. (430 aa)    
Predicted Functional Partners:
J3LTR6_ORYBR
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 0.765
J3M446_ORYBR
Ribosomal_L2_C domain-containing protein.
   
 
 0.654
J3L847_ORYBR
S10_plectin domain-containing protein.
   
 0.651
J3LXY1_ORYBR
S10_plectin domain-containing protein.
   
 0.651
J3MR86_ORYBR
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
  0.648
J3ND57_ORYBR
Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family.
   
  0.648
J3MVA5_ORYBR
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.632
J3N0A8_ORYBR
40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.
   
 0.632
J3LRZ6_ORYBR
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
   
  0.631
J3MIX7_ORYBR
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
   
  0.631
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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