STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3N2L1_ORYBRDUF4220 domain-containing protein. (111 aa)    
Predicted Functional Partners:
J3N860_ORYBR
Uncharacterized protein.
  
 
   0.543
J3LVH4_ORYBR
DUF4220 domain-containing protein.
  
     0.542
J3N2L2_ORYBR
DUF4220 domain-containing protein.
  
     0.538
J3MS85_ORYBR
Uncharacterized protein.
  
 
   0.537
J3LDB9_ORYBR
Terpene_synth_C domain-containing protein.
  
     0.525
J3MIG6_ORYBR
F-box domain-containing protein.
  
 
  0.524
J3MX63_ORYBR
Uncharacterized protein.
  
 
   0.514
J3M5R6_ORYBR
LRRNT_2 domain-containing protein.
  
 
  0.508
J3LVH8_ORYBR
Uncharacterized protein.
  
     0.507
J3LVJ1_ORYBR
DUF4220 domain-containing protein.
  
     0.502
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.