STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3N2V7_ORYBRUncharacterized protein; Belongs to the SKP1 family. (220 aa)    
Predicted Functional Partners:
J3LXZ2_ORYBR
F-box domain-containing protein.
    
 0.731
J3KVN8_ORYBR
RING-type domain-containing protein.
   
 0.703
J3LGB9_ORYBR
RING-type domain-containing protein.
   
 0.703
J3L214_ORYBR
TPR_REGION domain-containing protein.
   
 
 0.635
Rpl2
Ribosomal_L2_C domain-containing protein.
   
 0.620
J3M262_ORYBR
MPN domain-containing protein.
   
 0.592
J3LJZ4_ORYBR
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
    
 0.536
J3N4T6_ORYBR
Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
    
 0.536
J3KZX9_ORYBR
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.517
J3KZY0_ORYBR
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 0.517
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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