STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3N6H0_ORYBRUncharacterized protein. (1370 aa)    
Predicted Functional Partners:
J3LSE7_ORYBR
Uncharacterized protein.
    
 0.976
J3N456_ORYBR
HHH_2 domain-containing protein.
    
 0.963
J3L032_ORYBR
MPN domain-containing protein.
    
 0.944
J3L7T2_ORYBR
ERCC4 domain-containing protein.
    
 0.942
J3KWY3_ORYBR
DUF1767 domain-containing protein.
    
 
 0.900
J3KUK0_ORYBR
SMC_N domain-containing protein.
   
 
 0.891
J3LXE2_ORYBR
Uncharacterized protein.
    
 0.879
J3MAF0_ORYBR
SMC_N domain-containing protein.
   
 
 0.860
J3N1J2_ORYBR
Uncharacterized protein.
   
 
 0.860
J3LKB1_ORYBR
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
   
 
 0.848
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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