STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3NAT8_ORYBRUncharacterized protein. (290 aa)    
Predicted Functional Partners:
J3LEC0_ORYBR
Brix domain-containing protein.
   
 
 0.994
J3LRV4_ORYBR
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.994
J3MKB7_ORYBR
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.993
J3MSY1_ORYBR
RRM domain-containing protein.
   
 
 0.992
J3MMP5_ORYBR
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.991
J3MR08_ORYBR
Brix domain-containing protein.
   
 
 0.987
J3M287_ORYBR
Uncharacterized protein.
   
 
 0.980
J3MB31_ORYBR
Brix domain-containing protein.
   
 
 0.979
J3L0G2_ORYBR
TRASH domain-containing protein.
   
 
 0.976
J3ML65_ORYBR
WD_REPEATS_REGION domain-containing protein.
   
 
 0.975
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.