STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
J3NFD1_ORYBRAAA domain-containing protein; Belongs to the AAA ATPase family. (201 aa)    
Predicted Functional Partners:
J3M4J6_ORYBR
Pribosyltran domain-containing protein.
  
  
 0.521
Rpl2
Ribosomal_L2_C domain-containing protein.
   
 
 0.485
J3LU24_ORYBR
Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.
   
 
 0.476
J3N3U1_ORYBR
Uncharacterized protein; Belongs to the bacterial ribosomal protein bS18 family.
   
   0.456
J3MUG2_ORYBR
Uncharacterized protein.
  
   0.428
J3MYU4_ORYBR
Uncharacterized protein.
  
   0.428
G8JBA5_ORYBR
Prohibitin.
   
 0.424
J3LUN1_ORYBR
Prohibitin.
   
 0.424
J3L1F6_ORYBR
PHB domain-containing protein.
   
 0.421
J3L1F9_ORYBR
PHB domain-containing protein.
   
 0.421
Your Current Organism:
Oryza brachyantha
NCBI taxonomy Id: 4533
Other names: O. brachyantha, Oryza brachyantha A.Chev. & Roehr., malo sina
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