v1g242071 protein (Nematostella vectensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

v1g242071

Predicted protein. (175 aa)

Predicted Functional Partners:

v1g193264

0.714

v1g126254

0.671

v1g181729

0.556

v1g245349

0.530

v1g211075

0.500

v1g41423

0.484

v1g210155

0.470

v1g236526

0.449

v1g242669

0.448

v1g245869

0.440

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g126254	v1g193264	A7SPN8	A7ST81	Predicted protein.	Predicted protein.	0.675
v1g126254	v1g210155	A7SPN8	A7SCI9	Predicted protein.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.649
v1g126254	v1g211075	A7SPN8	A7SEL8	Predicted protein.	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.520
v1g126254	v1g242071	A7SPN8	A7S0W5	Predicted protein.	Predicted protein.	0.671
v1g181729	v1g242071	A7RTH0	A7S0W5	Predicted protein.	Predicted protein.	0.556
v1g193264	v1g126254	A7ST81	A7SPN8	Predicted protein.	Predicted protein.	0.675
v1g193264	v1g211075	A7ST81	A7SEL8	Predicted protein.	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.577
v1g193264	v1g242071	A7ST81	A7S0W5	Predicted protein.	Predicted protein.	0.714
v1g210155	v1g126254	A7SCI9	A7SPN8	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Predicted protein.	0.649
v1g210155	v1g211075	A7SCI9	A7SEL8	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.852
v1g210155	v1g242071	A7SCI9	A7S0W5	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Predicted protein.	0.470
v1g211075	v1g126254	A7SEL8	A7SPN8	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Predicted protein.	0.520
v1g211075	v1g193264	A7SEL8	A7ST81	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Predicted protein.	0.577
v1g211075	v1g210155	A7SEL8	A7SCI9	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	MICOS complex subunit; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	0.852
v1g211075	v1g242071	A7SEL8	A7S0W5	MICOS complex subunit MIC10; Component of the MICOS complex, a large protein complex of the mitochondrial inner membrane that plays crucial roles in the maintenance of crista junctions, inner membrane architecture, and formation of contact sites to the outer membrane.	Predicted protein.	0.500
v1g236526	v1g242071	A7RPU1	A7S0W5	Predicted protein.	Predicted protein.	0.449
v1g236526	v1g242669	A7RPU1	A7S3V9	Predicted protein.	Predicted protein.	0.591
v1g236526	v1g245869	A7RPU1	A7SKH7	Predicted protein.	Predicted protein.	0.563
v1g242071	v1g126254	A7S0W5	A7SPN8	Predicted protein.	Predicted protein.	0.671
v1g242071	v1g181729	A7S0W5	A7RTH0	Predicted protein.	Predicted protein.	0.556