v1g41423 protein (Nematostella vectensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

v1g41423

Predicted protein. (289 aa)

Predicted Functional Partners:

v1g179966

0.986

v1g246769

0.986

v1g163210

0.984

v1g86017

0.982

v1g84167

0.978

v1g139413

0.941

v1g122269

0.890

v1g245816

0.841

v1g35830

0.840

v1g243212

0.817

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
v1g122269	v1g139413	A7SL29	A7SZR3	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Predicted protein.	0.919
v1g122269	v1g163210	A7SL29	A7RVL6	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Predicted protein.	0.953
v1g122269	v1g179966	A7SL29	A7RMW1	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.906
v1g122269	v1g243212	A7SL29	A7S6J4	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Predicted protein.	0.954
v1g122269	v1g245816	A7SL29	A7SK73	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Predicted protein.	0.991
v1g122269	v1g246769	A7SL29	A7SQJ7	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Predicted protein.	0.996
v1g122269	v1g35830	A7SL29	A7RI04	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Predicted protein.	0.449
v1g122269	v1g41423	A7SL29	A7SUW6	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Predicted protein.	0.890
v1g122269	v1g84167	A7SL29	A7RK29	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Predicted protein.	0.991
v1g122269	v1g86017	A7SL29	A7RLN7	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	Predicted protein; Belongs to the heat shock protein 70 family.	0.748
v1g139413	v1g122269	A7SZR3	A7SL29	Predicted protein.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.919
v1g139413	v1g163210	A7SZR3	A7RVL6	Predicted protein.	Predicted protein.	0.995
v1g139413	v1g179966	A7SZR3	A7RMW1	Predicted protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.942
v1g139413	v1g243212	A7SZR3	A7S6J4	Predicted protein.	Predicted protein.	0.712
v1g139413	v1g245816	A7SZR3	A7SK73	Predicted protein.	Predicted protein.	0.926
v1g139413	v1g246769	A7SZR3	A7SQJ7	Predicted protein.	Predicted protein.	0.977
v1g139413	v1g41423	A7SZR3	A7SUW6	Predicted protein.	Predicted protein.	0.941
v1g139413	v1g84167	A7SZR3	A7RK29	Predicted protein.	Predicted protein.	0.973
v1g139413	v1g86017	A7SZR3	A7RLN7	Predicted protein.	Predicted protein; Belongs to the heat shock protein 70 family.	0.971
v1g163210	v1g122269	A7RVL6	A7SL29	Predicted protein.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.953