v1g222953 protein (Nematostella vectensis) - STRING interaction network

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second shell of interactors

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Predicted Interactions

gene neighborhood

gene fusions

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textmining

co-expression

protein homology

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Score

v1g222953

Predicted protein. (180 aa)

Predicted Functional Partners:

LSM8

0.846

v1g172574

0.844

LSM5

0.840

v1g243034

0.840

LSM4

0.837

v1g193817

0.813

v1g235197

0.621

v1g241701

0.594

v1g193135

0.560

v1g84855

0.554

Your Current Organism:

Nematostella vectensis

NCBI taxonomy Id: 45351
Other names: N. vectensis, starlet sea anemone

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM4	LSM5	A7RTS4	A7RHV2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM4	LSM8	A7RTS4	A7RIQ2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM4	v1g172574	A7RTS4	A7SNR1	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM4	v1g193135	A7RTS4	A7SSP9	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Predicted protein.	0.990
LSM4	v1g193817	A7RTS4	A7SUU3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Predicted protein.	0.999
LSM4	v1g222953	A7RTS4	A7T6C4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Predicted protein.	0.837
LSM4	v1g235197	A7RTS4	A7SAL9	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Predicted protein.	0.992
LSM4	v1g241701	A7RTS4	A7RZ49	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Predicted protein.	0.984
LSM4	v1g243034	A7RTS4	A7S5M5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Predicted protein.	0.999
LSM4	v1g84855	A7RTS4	A7RKG3	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Predicted protein.	0.967
LSM5	LSM4	A7RHV2	A7RTS4	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	LSM8	A7RHV2	A7RIQ2	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	v1g172574	A7RHV2	A7SNR1	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM5	v1g193135	A7RHV2	A7SSP9	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Predicted protein.	0.982
LSM5	v1g193817	A7RHV2	A7SUU3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Predicted protein.	0.999
LSM5	v1g222953	A7RHV2	A7T6C4	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Predicted protein.	0.840
LSM5	v1g235197	A7RHV2	A7SAL9	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Predicted protein.	0.977
LSM5	v1g241701	A7RHV2	A7RZ49	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Predicted protein.	0.988
LSM5	v1g243034	A7RHV2	A7S5M5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Predicted protein.	0.999
LSM5	v1g84855	A7RHV2	A7RKG3	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	Predicted protein.	0.978