STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS54681.1Crotonobetainyl-CoA:carnitine CoA-transferase CaiB; Belongs to the CoA-transferase III family. (400 aa)    
Predicted Functional Partners:
SIS45512.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.855
SIS54790.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.808
SIS54813.1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.793
SIS54760.1
3-hydroxybutyryl-CoA dehydratase.
 
  
 0.784
SIS54856.1
Hypothetical protein.
 
     0.775
SIS54704.1
acyl-CoA dehydrogenase/acyl-CoA dehydrogenase.
 
  0.752
SIS43742.1
methylmalonyl-CoA mutase.
    
 0.693
SIT20915.1
(R)-ethylmalonyl-CoA mutase.
    
 0.693
SIS54882.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.675
SIS55057.1
Acyl dehydratase.
 
  
 0.636
Your Current Organism:
Rhodobacter aestuarii
NCBI taxonomy Id: 453582
Other names: CCUG 55130, DSM 19945, JCM 14887, R. aestuarii, Rhodobacter aestuarii Venkata Ramana et al. 2009, strain JA296
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.