STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT04762.1Lsr operon transcriptional repressor. (318 aa)    
Predicted Functional Partners:
SIT04780.1
Autoinducer 2 (AI-2) kinase.
 
   
 0.903
SIT04652.1
AI-2 transport system substrate-binding protein.
 
    0.754
SIT04744.1
Autoinducer 2-degrading protein.
 
  
 0.670
SIS89534.1
Phosphocarrier protein FPr.
 
  
 0.515
SIT04676.1
Monosaccharide ABC transporter membrane protein, CUT2 family; Belongs to the binding-protein-dependent transport system permease family.
 
    0.515
SIT04695.1
AI-2 transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.509
SIT04711.1
Monosaccharide ABC transporter ATP-binding protein, CUT2 family.
  
    0.451
SIT11914.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
  
    0.446
SIT04726.1
Ribulose-5-phosphate 3-epimerase.
       0.444
SIT04799.1
Hypothetical protein.
       0.435
Your Current Organism:
Rhodobacter aestuarii
NCBI taxonomy Id: 453582
Other names: CCUG 55130, DSM 19945, JCM 14887, R. aestuarii, Rhodobacter aestuarii Venkata Ramana et al. 2009, strain JA296
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.