STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT17005.1Chromosome partitioning protein, ParB family. (282 aa)    
Predicted Functional Partners:
SIT16982.1
Putative transposase.
 
     0.946
SIT16993.1
Hypothetical protein.
 
     0.944
SIT16969.1
DNA transposition protein, AAA+ family ATPase.
 
     0.916
SIT16930.1
Protein of unknown function.
 
     0.912
SIT16952.1
Hypothetical protein.
 
     0.872
SIT16892.1
Protein of unknown function.
 
     0.826
SIT16812.1
Protein of unknown function.
 
     0.758
SIT16796.1
Phage uncharacterized protein (putative large terminase), C-terminal domain-containing protein.
 
     0.753
SIT16761.1
Phage Mu protein F like protein.
 
     0.744
SIT16591.1
Prophage tail length tape measure protein.
 
     0.739
Your Current Organism:
Rhodobacter aestuarii
NCBI taxonomy Id: 453582
Other names: CCUG 55130, DSM 19945, JCM 14887, R. aestuarii, Rhodobacter aestuarii Venkata Ramana et al. 2009, strain JA296
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