STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT20298.1Hypothetical protein. (205 aa)    
Predicted Functional Partners:
SIT20291.1
Hypothetical protein.
 
     0.963
SIT20285.1
Phage major capsid protein E.
 
     0.928
SIT20277.1
Bacteriophage lambda head decoration protein D.
 
     0.922
SIT20322.1
Hypothetical protein.
 
     0.821
SIT20328.1
Hypothetical protein.
 
     0.818
SIT20243.1
Hypothetical protein.
 
     0.795
SIT20344.1
Hypothetical protein.
 
     0.794
SIT20253.1
Phage terminase, large subunit GpA.
 
     0.784
SIT20369.1
Phage tail tape measure protein, lambda family.
 
     0.779
SIT20225.1
Hypothetical protein.
 
     0.776
Your Current Organism:
Rhodobacter aestuarii
NCBI taxonomy Id: 453582
Other names: CCUG 55130, DSM 19945, JCM 14887, R. aestuarii, Rhodobacter aestuarii Venkata Ramana et al. 2009, strain JA296
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.