Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Igni_0118PFAM: ABC transporter related; SMART: AAA ATPase. (247 aa)    
Predicted Functional Partners:
Igni_0913
Hypothetical protein.
  
 
 0.992
Igni_0914
ABC-type metal ion transport system periplasmic component/surface adhesin-like protein.
 
  
 0.969
Igni_0114
Hypothetical protein.
       0.776
Igni_0113
Hypothetical protein.
       0.773
Igni_0115
PFAM: UBA/THIF-type NAD/FAD binding protein.
       0.773
Igni_0116
Hypothetical protein.
       0.773
Igni_0117
Hypothetical protein.
       0.773
Igni_0112
Hypothetical protein.
  
    0.705
Igni_0119
Hypothetical protein.
       0.697
Igni_0120
TIGRFAM: tRNA intron endonuclease; PFAM: tRNA intron endonuclease, catalytic-like.
       0.697
Your Current Organism:
Ignicoccus hospitalis
NCBI taxonomy Id: 453591
Other names: I. hospitalis KIN4/I, Ignicoccus hospitalis DSM 18386, Ignicoccus hospitalis JCM 14125, Ignicoccus hospitalis KIN4/I, Ignicoccus hospitalis str. KIN4/I, Ignicoccus hospitalis strain KIN4/I
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