Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Igni_0124Hypothetical protein. (76 aa)    
Predicted Functional Partners:
Igni_0260
PFAM: molybdopterin biosynthesis MoaE protein; thiamineS protein.
   
 
 0.836
Igni_0125
PFAM: Rhomboid family protein.
       0.693
Igni_0673
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
     
 0.567
Igni_0126
Conserved hypothetical protein.
       0.495
Igni_0672
PFAM: protein of unknown function DUF1641.
       0.489
Igni_0127
PFAM: tRNA/rRNA methyltransferase (SpoU).
     
 0.467
Igni_0580
PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit.
  
  
 0.425
Your Current Organism:
Ignicoccus hospitalis
NCBI taxonomy Id: 453591
Other names: I. hospitalis KIN4/I, Ignicoccus hospitalis DSM 18386, Ignicoccus hospitalis JCM 14125, Ignicoccus hospitalis KIN4/I, Ignicoccus hospitalis str. KIN4/I, Ignicoccus hospitalis strain KIN4/I
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