STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Igni_1189PFAM: Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein. (377 aa)    
Predicted Functional Partners:
Igni_0628
PFAM: oxidoreductase domain protein; Alcohol dehydrogenase, zinc-binding domain protein.
  
  
 0.861
Igni_1188
Hypothetical protein.
       0.773
Igni_1190
Hypothetical protein.
       0.773
Igni_1191
PFAM: glycerophosphoryl diester phosphodiesterase.
     
 0.558
Igni_0379
PFAM: AMP-dependent synthetase and ligase.
 
  
 0.486
Igni_0042
PFAM: oxidoreductase FAD/NAD(P)-binding domain protein.
 
  
 0.418
Igni_0002
PFAM: FAD linked oxidase domain protein.
 
   
 0.409
Your Current Organism:
Ignicoccus hospitalis
NCBI taxonomy Id: 453591
Other names: I. hospitalis KIN4/I, Ignicoccus hospitalis DSM 18386, Ignicoccus hospitalis JCM 14125, Ignicoccus hospitalis KIN4/I, Ignicoccus hospitalis str. KIN4/I, Ignicoccus hospitalis strain KIN4/I
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.