A0A0E0G175 protein (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0G175

Uncharacterized protein. (328 aa)

Predicted Functional Partners:

A0A0E0H0X3

0.551

A0A0E0GBZ2

0.536

A0A0E0GV38

0.526

A0A0E0IS38

0.526

A0A0E0GH56

0.520

A0A0E0GTI4

0.520

A0A0E0HIY1

0.499

A0A0E0FT21

0.471

A0A0E0ITL2

0.471

A0A0E0HVT9

0.470

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FT21	A0A0E0G175	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Uncharacterized protein.	0.471
A0A0E0FT21	A0A0E0GBZ2	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Uncharacterized protein.	0.536
A0A0E0FT21	A0A0E0GH56	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Histone H2A; Belongs to the histone H2A family.	0.520
A0A0E0FT21	A0A0E0GTI4	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Uncharacterized protein; Belongs to the histone H2A family.	0.520
A0A0E0FT21	A0A0E0GV38	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Uncharacterized protein.	0.526
A0A0E0FT21	A0A0E0H0X3	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.551
A0A0E0FT21	A0A0E0HVT9	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Uncharacterized protein.	0.470
A0A0E0FT21	A0A0E0IS38	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	Uncharacterized protein.	0.526
A0A0E0G175	A0A0E0FT21	Uncharacterized protein.	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	0.471
A0A0E0G175	A0A0E0GBZ2	Uncharacterized protein.	Uncharacterized protein.	0.536
A0A0E0G175	A0A0E0GH56	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.520
A0A0E0G175	A0A0E0GTI4	Uncharacterized protein.	Uncharacterized protein; Belongs to the histone H2A family.	0.520
A0A0E0G175	A0A0E0GV38	Uncharacterized protein.	Uncharacterized protein.	0.526
A0A0E0G175	A0A0E0H0X3	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.551
A0A0E0G175	A0A0E0HIY1	Uncharacterized protein.	GATA-type domain-containing protein.	0.499
A0A0E0G175	A0A0E0HVT9	Uncharacterized protein.	Uncharacterized protein.	0.470
A0A0E0G175	A0A0E0IS38	Uncharacterized protein.	Uncharacterized protein.	0.526
A0A0E0G175	A0A0E0ITL2	Uncharacterized protein.	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	0.471
A0A0E0GBZ2	A0A0E0FT21	Uncharacterized protein.	GATA transcription factor; Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. Belongs to the type IV zinc-finger family. Class A subfamily.	0.536
A0A0E0GBZ2	A0A0E0G175	Uncharacterized protein.	Uncharacterized protein.	0.536