A0A0E0G7K2 protein (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0G7K2

Acetyl-coenzyme A synthetase. (705 aa)

Predicted Functional Partners:

A0A0E0H2C9

0.987

A0A0E0G3Z6

0.985

A0A0E0G382

0.983

A0A0E0GE63

0.977

A0A0E0J2M8

0.977

A0A0E0HJK4

0.969

A0A0E0FF59

0.968

A0A0E0IGV1

0.968

A0A0E0HQR8

0.963

A0A0E0J405

0.963

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FF59	A0A0E0G382	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Citrate synthase; Belongs to the citrate synthase family.	0.970
A0A0E0FF59	A0A0E0G3Z6	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Citrate synthase.	0.970
A0A0E0FF59	A0A0E0G7K2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acetyl-coenzyme A synthetase.	0.968
A0A0E0FF59	A0A0E0GE63	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.959
A0A0E0FF59	A0A0E0H2C9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Malate synthase; Belongs to the malate synthase family.	0.966
A0A0E0FF59	A0A0E0HJK4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.981
A0A0E0FF59	A0A0E0HQR8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.975
A0A0E0FF59	A0A0E0IGV1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.930
A0A0E0FF59	A0A0E0J2M8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Citrate synthase; Belongs to the citrate synthase family.	0.959
A0A0E0FF59	A0A0E0J405	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.975
A0A0E0G382	A0A0E0FF59	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.970
A0A0E0G382	A0A0E0G3Z6	Citrate synthase; Belongs to the citrate synthase family.	Citrate synthase.	0.934
A0A0E0G382	A0A0E0G7K2	Citrate synthase; Belongs to the citrate synthase family.	Acetyl-coenzyme A synthetase.	0.983
A0A0E0G382	A0A0E0H2C9	Citrate synthase; Belongs to the citrate synthase family.	Malate synthase; Belongs to the malate synthase family.	0.981
A0A0E0G382	A0A0E0HJK4	Citrate synthase; Belongs to the citrate synthase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.885
A0A0E0G382	A0A0E0HQR8	Citrate synthase; Belongs to the citrate synthase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.749
A0A0E0G382	A0A0E0IGV1	Citrate synthase; Belongs to the citrate synthase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.970
A0A0E0G382	A0A0E0J405	Citrate synthase; Belongs to the citrate synthase family.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.749
A0A0E0G3Z6	A0A0E0FF59	Citrate synthase.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.970
A0A0E0G3Z6	A0A0E0G382	Citrate synthase.	Citrate synthase; Belongs to the citrate synthase family.	0.934