STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0GE56Shugoshin_C domain-containing protein. (486 aa)    
Predicted Functional Partners:
A0A0E0GDD5
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.870
A0A0E0ID56
Uncharacterized protein.
    
 0.870
A0A0E0ID59
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
 0.870
A0A0E0G4W5
Uncharacterized protein.
    
 0.758
A0A0E0GD41
Uncharacterized protein.
    
 0.725
A0A0E0HNL6
Uncharacterized protein.
    
 0.711
A0A0E0G6G1
Uncharacterized protein.
    
 0.700
A0A0E0IN46
Uncharacterized protein.
    
 0.700
A0A0E0H802
Protein kinase domain-containing protein.
   
 0.636
N16-9
DUF4220 domain-containing protein.
  
 
  0.633
Your Current Organism:
Oryza sativa f. spontanea
NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.
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