STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0GZF9BHLH domain-containing protein. (476 aa)    
Predicted Functional Partners:
A0A0E0GT67
Uncharacterized protein.
    
  0.744
A0A0E0I608
Uncharacterized protein.
  
 
  0.562
A0A0E0IBQ1
Neprosin domain-containing protein.
  
  
  0.547
A0A0E0FVY7
Uncharacterized protein.
    
  0.518
A0A0E0G5N8
Uncharacterized protein.
    
  0.518
A0A0E0IFR7
Uncharacterized protein.
    
  0.518
A0A0E0IFS5
Uncharacterized protein.
    
  0.518
A0A0E0GP54
Uncharacterized protein.
    
  0.499
A0A0E0HS64
Uncharacterized protein.
    
  0.499
A0A0E0GVG0
Uncharacterized protein.
    
 0.495
Your Current Organism:
Oryza sativa f. spontanea
NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.
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