A0A0E0H0M2 protein (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0H0M2

Uncharacterized protein. (277 aa)

Predicted Functional Partners:

A0A0E0IIQ9

0.677

A0A0E0GJZ6

0.571

A0A0E0H9E7

0.533

A0A0E0I6Q4

0.532

A0A0E0I7Y0

0.513

A0A0E0I6J1

0.504

A0A0E0GUD8

0.503

A0A0E0HA31

0.500

A0A0E0GW73

0.499

A0A0E0IXE7

0.498

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0GJZ6	A0A0E0H0M2	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein.	0.571
A0A0E0GJZ6	A0A0E0I6Q4	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.999
A0A0E0GUD8	A0A0E0GW73	Uncharacterized protein.	Pkinase_Tyr domain-containing protein.	0.436
A0A0E0GUD8	A0A0E0H0M2	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A0E0GUD8	A0A0E0HA31	Uncharacterized protein.	LOB domain-containing protein.	0.461
A0A0E0GUD8	A0A0E0I7Y0	Uncharacterized protein.	Uncharacterized protein.	0.487
A0A0E0GW73	A0A0E0GUD8	Pkinase_Tyr domain-containing protein.	Uncharacterized protein.	0.436
A0A0E0GW73	A0A0E0H0M2	Pkinase_Tyr domain-containing protein.	Uncharacterized protein.	0.499
A0A0E0GW73	A0A0E0HA31	Pkinase_Tyr domain-containing protein.	LOB domain-containing protein.	0.561
A0A0E0GW73	A0A0E0I7Y0	Pkinase_Tyr domain-containing protein.	Uncharacterized protein.	0.522
A0A0E0GW73	A0A0E0IXE7	Pkinase_Tyr domain-containing protein.	Uncharacterized protein.	0.453
A0A0E0H0M2	A0A0E0GJZ6	Uncharacterized protein.	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.571
A0A0E0H0M2	A0A0E0GUD8	Uncharacterized protein.	Uncharacterized protein.	0.503
A0A0E0H0M2	A0A0E0GW73	Uncharacterized protein.	Pkinase_Tyr domain-containing protein.	0.499
A0A0E0H0M2	A0A0E0H9E7	Uncharacterized protein.	Uncharacterized protein.	0.533
A0A0E0H0M2	A0A0E0HA31	Uncharacterized protein.	LOB domain-containing protein.	0.500
A0A0E0H0M2	A0A0E0I6J1	Uncharacterized protein.	Rick_17kDa_Anti domain-containing protein.	0.504
A0A0E0H0M2	A0A0E0I6Q4	Uncharacterized protein.	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.532
A0A0E0H0M2	A0A0E0I7Y0	Uncharacterized protein.	Uncharacterized protein.	0.513
A0A0E0H0M2	A0A0E0IIQ9	Uncharacterized protein.	Uncharacterized protein.	0.677