A0A0E0H1X4 protein (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0H1X4

Uncharacterized protein. (216 aa)

Predicted Functional Partners:

A0A0E0HX03

0.624

A0A0E0G979

0.557

A0A0E0IG37

0.522

A0A0E0FU01

0.510

A0A0E0FXL9

0.510

A0A0E0HGI5

0.502

A0A0E0I2E3

0.498

A0A0E0IXI6

0.497

A0A0E0G726

0.495

A0A0E0GE20

0.495

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FU01	A0A0E0FXL9	SAND domain-containing protein.	Uncharacterized protein.	0.501
A0A0E0FU01	A0A0E0G726	SAND domain-containing protein.	Uncharacterized protein.	0.536
A0A0E0FU01	A0A0E0GE20	SAND domain-containing protein.	Uncharacterized protein.	0.539
A0A0E0FU01	A0A0E0H1X4	SAND domain-containing protein.	Uncharacterized protein.	0.510
A0A0E0FU01	A0A0E0I2E3	SAND domain-containing protein.	Uncharacterized protein.	0.472
A0A0E0FU01	A0A0E0IG37	SAND domain-containing protein.	Uncharacterized protein.	0.495
A0A0E0FU01	A0A0E0IXI6	SAND domain-containing protein.	Post-SET domain-containing protein.	0.528
A0A0E0FXL9	A0A0E0FU01	Uncharacterized protein.	SAND domain-containing protein.	0.501
A0A0E0FXL9	A0A0E0G726	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A0E0FXL9	A0A0E0GE20	Uncharacterized protein.	Uncharacterized protein.	0.541
A0A0E0FXL9	A0A0E0H1X4	Uncharacterized protein.	Uncharacterized protein.	0.510
A0A0E0FXL9	A0A0E0HGI5	Uncharacterized protein.	Uncharacterized protein.	0.505
A0A0E0FXL9	A0A0E0I2E3	Uncharacterized protein.	Uncharacterized protein.	0.427
A0A0E0FXL9	A0A0E0IG37	Uncharacterized protein.	Uncharacterized protein.	0.691
A0A0E0G726	A0A0E0FU01	Uncharacterized protein.	SAND domain-containing protein.	0.536
A0A0E0G726	A0A0E0FXL9	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A0E0G726	A0A0E0GE20	Uncharacterized protein.	Uncharacterized protein.	0.582
A0A0E0G726	A0A0E0H1X4	Uncharacterized protein.	Uncharacterized protein.	0.495
A0A0E0G726	A0A0E0HGI5	Uncharacterized protein.	Uncharacterized protein.	0.536
A0A0E0G726	A0A0E0I2E3	Uncharacterized protein.	Uncharacterized protein.	0.436