A0A0E0H895 protein (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0H895

Uncharacterized protein. (210 aa)

Predicted Functional Partners:

A0A0E0GRK8

0.967

A0A0E0GX40

0.967

A0A0E0IXN2

0.966

A0A0E0HNC1

0.956

A0A0E0GUX4

0.954

A0A0E0GE84

0.933

A0A0E0HI02

0.924

A0A0E0FR75

0.916

A0A0E0I6L3

0.909

A0A0E0FSH3

0.896

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0FR75	A0A0E0FSH3	Uncharacterized protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.995
A0A0E0FR75	A0A0E0GE84	Uncharacterized protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
A0A0E0FR75	A0A0E0GRK8	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0E0FR75	A0A0E0GUX4	Uncharacterized protein.	Ribos_L4_asso_C domain-containing protein.	0.999
A0A0E0FR75	A0A0E0GX40	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0E0FR75	A0A0E0H895	Uncharacterized protein.	Uncharacterized protein.	0.916
A0A0E0FR75	A0A0E0HI02	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0E0FR75	A0A0E0HNC1	Uncharacterized protein.	Ribosomal_S27 domain-containing protein.	0.999
A0A0E0FR75	A0A0E0I6L3	Uncharacterized protein.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
A0A0E0FR75	A0A0E0IXN2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
A0A0E0FSH3	A0A0E0FR75	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.995
A0A0E0FSH3	A0A0E0GE84	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.997
A0A0E0FSH3	A0A0E0GRK8	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.998
A0A0E0FSH3	A0A0E0GUX4	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribos_L4_asso_C domain-containing protein.	0.997
A0A0E0FSH3	A0A0E0GX40	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.998
A0A0E0FSH3	A0A0E0H895	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.896
A0A0E0FSH3	A0A0E0HI02	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein.	0.995
A0A0E0FSH3	A0A0E0HNC1	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Ribosomal_S27 domain-containing protein.	0.998
A0A0E0FSH3	A0A0E0I6L3	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.995
A0A0E0FSH3	A0A0E0IXN2	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.998