STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0HLP0Uncharacterized protein. (466 aa)    
Predicted Functional Partners:
A0A0E0FIK5
Uncharacterized protein.
   
 0.994
A0A0E0J2P1
Ribosomal_TL5_C domain-containing protein.
  
 0.993
A0A0E0GX40
Uncharacterized protein.
   
 0.990
rps14
30S ribosomal protein S14, chloroplastic; Binds 16S rRNA, required for the assembly of 30S particles.
   
 0.989
rps12
30S ribosomal protein S12, chloroplastic; With S4 and S5 plays an important role in translational accuracy. Located at the interface of the 30S and 50S subunits (By similarity).
  
 0.987
A0A0E0FY60
Uncharacterized protein.
  
 
 0.986
A0A0E0GRK8
Uncharacterized protein.
   
 0.986
A0A0E0HFD8
Uncharacterized protein.
  
 
 0.986
A0A0E0GUA2
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
  
 0.984
A0A0E0I554
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
  
 0.984
Your Current Organism:
Oryza sativa f. spontanea
NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.
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