A0A0E0IUJ3 protein (Oryza sativa f. spontanea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0IUJ3

ULP_PROTEASE domain-containing protein. (48 aa)

Predicted Functional Partners:

A0A0E0G3F2

0.762

A0A0E0GB35

0.750

A0A0E0GMD9

0.742

A0A0E0IMZ2

0.735

A0A0E0IRN9

0.724

A0A0E0J4X4

0.724

A0A0E0IUG9

0.710

A0A0E0FVX5

0.709

A0A0E0FT23

0.695

GATC

0.695

Your Current Organism:

Oryza sativa f. spontanea

NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0FT23	A0A0E0FVX5	A0A0E0FT23	A0A0E0FVX5	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nsp1_C domain-containing protein.	0.989
A0A0E0FT23	A0A0E0G3F2	A0A0E0FT23	A0A0E0G3F2	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.986
A0A0E0FT23	A0A0E0GB35	A0A0E0FT23	A0A0E0GB35	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.981
A0A0E0FT23	A0A0E0GMD9	A0A0E0FT23	A0A0E0GMD9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.986
A0A0E0FT23	A0A0E0IMZ2	A0A0E0FT23	A0A0E0IMZ2	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.982
A0A0E0FT23	A0A0E0IRN9	A0A0E0FT23	A0A0E0IRN9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Uncharacterized protein.	0.981
A0A0E0FT23	A0A0E0IUG9	A0A0E0FT23	A0A0E0IUG9	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nup54 domain-containing protein.	0.988
A0A0E0FT23	A0A0E0IUJ3	A0A0E0FT23	A0A0E0IUJ3	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	ULP_PROTEASE domain-containing protein.	0.695
A0A0E0FT23	A0A0E0J4X4	A0A0E0FT23	A0A0E0J4X4	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.988
A0A0E0FVX5	A0A0E0FT23	A0A0E0FVX5	A0A0E0FT23	Nsp1_C domain-containing protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.989
A0A0E0FVX5	A0A0E0G3F2	A0A0E0FVX5	A0A0E0G3F2	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.991
A0A0E0FVX5	A0A0E0GB35	A0A0E0FVX5	A0A0E0GB35	Nsp1_C domain-containing protein.	Uncharacterized protein; Belongs to the WD repeat SEC13 family.	0.991
A0A0E0FVX5	A0A0E0GMD9	A0A0E0FVX5	A0A0E0GMD9	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.995
A0A0E0FVX5	A0A0E0IMZ2	A0A0E0FVX5	A0A0E0IMZ2	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.994
A0A0E0FVX5	A0A0E0IRN9	A0A0E0FVX5	A0A0E0IRN9	Nsp1_C domain-containing protein.	Uncharacterized protein.	0.980
A0A0E0FVX5	A0A0E0IUG9	A0A0E0FVX5	A0A0E0IUG9	Nsp1_C domain-containing protein.	Nup54 domain-containing protein.	0.999
A0A0E0FVX5	A0A0E0IUJ3	A0A0E0FVX5	A0A0E0IUJ3	Nsp1_C domain-containing protein.	ULP_PROTEASE domain-containing protein.	0.709
A0A0E0FVX5	A0A0E0J4X4	A0A0E0FVX5	A0A0E0J4X4	Nsp1_C domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.980
A0A0E0FVX5	GATC	A0A0E0FVX5	A0A0E0GR47	Nsp1_C domain-containing protein.	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family.	0.984
A0A0E0G3F2	A0A0E0FT23	A0A0E0G3F2	A0A0E0FT23	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.986