STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0J6E3Str_synth domain-containing protein. (527 aa)    
Predicted Functional Partners:
A0A0E0FK58
Uncharacterized protein.
   
 0.789
A0A0E0FUM7
Uncharacterized protein.
   
 0.789
A0A0E0GLM6
Uncharacterized protein.
   
 0.789
A0A0E0HG87
Uncharacterized protein.
   
 0.789
A0A0E0HNR7
Uncharacterized protein.
   
 0.789
A0A0E0GCX8
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.
   
 
 0.722
A0A0E0GG90
Uncharacterized protein; Belongs to the RNR ribonuclease family.
   
 
 0.722
A0A0E0IQD9
RNB domain-containing protein.
   
 
 0.722
A0A0E0J436
Uncharacterized protein.
   
 
 0.722
A0A0E0GGB4
Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
 0.719
Your Current Organism:
Oryza sativa f. spontanea
NCBI taxonomy Id: 4536
Other names: O. sativa f. spontanea, Oryza nivara, Oryza nivara S.D.Sharma & Shastry, Oryza sativa f. spontanea Roshev. nom. illeg.
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