Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAT04778.1HYPOTHETICAL PROTEIN. (485 aa)    
Predicted Functional Partners:
CAT05167.1
ABC transporter permease protein.
 
     0.563
ldh_1
HYPOTHETICAL L-lactate dehydrogenase.
       0.531
CAT04716.1
HYPOTHETICAL PROTEIN.
  
     0.477
CAT05275.1
Amino acid permease.
 
     0.443
CAT05291.1
HYPOTHETICAL PROTEIN.
  
     0.432
CAT05262.1
HYPOTHETICAL PROTEIN.
  
     0.429
CAT05082.1
HYPOTHETICAL PROTEIN.
  
     0.424
CAT04991.1
HYPOTHETICAL Uncharacterized protein MG366.
 
     0.409
MCYN0528_2
TRANSPOSASE FOR INSERTION SEQUENCE ELEMENT IS1.
       0.403
Your Current Organism:
Mycoplasma conjunctivae
NCBI taxonomy Id: 45361
Other names: ATCC 25834, M. conjunctivae, Mesomycoplasma conjunctivae, NCTC 10147, strain HRC/583
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