STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAT04783.1D-ribulose-5-phosphate 3 epimerase. (215 aa)    
Predicted Functional Partners:
tktA
Transketolase; Belongs to the transketolase family.
  
 0.972
tkt
Transketolase; Belongs to the transketolase family.
  
 0.949
rpiB
Ribose 5-phosphate isomerase B.
  
 
 0.924
sgaE
Sugar isomerase SgaE.
  
 
 0.916
rpe
Ribulose-phosphate 3-epimerase.
     
 
0.900
CAT04785.1
HYPOTHETICAL PROTEIN.
       0.799
ulaC_1
PTS system enzyme IIA component.
  
  
 0.738
CAT04788.1
HYPOTHETICAL PROTEIN.
       0.721
CAT04786.1
HYPOTHETICAL PROTEIN.
       0.711
fruA
PTS system, fructose-specific IIABC component.
  
  
 0.656
Your Current Organism:
Mycoplasma conjunctivae
NCBI taxonomy Id: 45361
Other names: ATCC 25834, M. conjunctivae, Mesomycoplasma conjunctivae, NCTC 10147, strain HRC/583
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