Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CAT05042.1HYPOTHETICAL PROTEIN. (728 aa)    
Predicted Functional Partners:
trsE-2
TRSE-like protein.
 
  
 0.854
trsE
Transfer complex protein.
 
  
 0.815
CAT05041.1
HYPOTHETICAL PROTEIN.
       0.773
ssb
Single-stranded DNA-binding protein.
       0.713
CAT05039.1
HYPOTHETICAL Uncharacterized protein UU046.
       0.645
CAT05040.1
HYPOTHETICAL PROTEIN.
       0.645
CAT05045.1
HYPOTHETICAL PROTEIN.
       0.644
MCYN0603_1
HYPOTHETICAL PROTEIN.
       0.622
CAT05046.1
HYPOTHETICAL PROTEIN.
       0.609
CAT05038.1
HYPOTHETICAL PROTEIN.
       0.519
Your Current Organism:
Mycoplasma conjunctivae
NCBI taxonomy Id: 45361
Other names: ATCC 25834, M. conjunctivae, Mesomycoplasma conjunctivae, NCTC 10147, strain HRC/583
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