pacL protein (Mycoplasma conjunctivae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

pacL

Cation-transporting P-type ATPase. (862 aa)

Predicted Functional Partners:

pdhD-1

0.640

copA

0.558

CAT05273.1

0.522

pdhD

0.497

fruA

0.496

bcrA

0.488

dnaK

0.486

gmk

0.483

atpE

0.475

rpsB

0.465

Your Current Organism:

Mycoplasma conjunctivae

NCBI taxonomy Id: 45361
Other names: ATCC 25834, M. conjunctivae, Mesomycoplasma conjunctivae, NCTC 10147, strain HRC/583

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAT05273.1	dnaK	MCJ_005760	MCJ_006260	HYPOTHETICAL PROTEIN.	Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.560
CAT05273.1	pacL	MCJ_005760	MCJ_005290	HYPOTHETICAL PROTEIN.	Cation-transporting P-type ATPase.	0.522
atpE	bcrA	MCJ_006510	MCJ_000370	PUTATIVE ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	ABC transporter ATP binding protein.	0.440
atpE	fruA	MCJ_006510	MCJ_005330	PUTATIVE ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	PTS system, fructose-specific IIABC component.	0.440
atpE	pacL	MCJ_006510	MCJ_005290	PUTATIVE ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	Cation-transporting P-type ATPase.	0.475
atpE	pdhD	MCJ_006510	MCJ_000700	PUTATIVE ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	Dihydrolipoamide dehydrogenase.	0.450
bcrA	atpE	MCJ_000370	MCJ_006510	ABC transporter ATP binding protein.	PUTATIVE ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.440
bcrA	pacL	MCJ_000370	MCJ_005290	ABC transporter ATP binding protein.	Cation-transporting P-type ATPase.	0.488
copA	pacL	MCJ_007300	MCJ_005290	Heavy-metal transporting P-type ATPase.	Cation-transporting P-type ATPase.	0.558
dnaK	CAT05273.1	MCJ_006260	MCJ_005760	Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	HYPOTHETICAL PROTEIN.	0.560
dnaK	gmk	MCJ_006260	MCJ_006290	Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	0.764
dnaK	pacL	MCJ_006260	MCJ_005290	Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Cation-transporting P-type ATPase.	0.486
dnaK	pdhD	MCJ_006260	MCJ_000700	Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Dihydrolipoamide dehydrogenase.	0.913
dnaK	pdhD-1	MCJ_006260	MCJ_005300	Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Dihydrolipoamide dehydrogenase.	0.505
dnaK	rpsB	MCJ_006260	MCJ_001200	Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.823
fruA	atpE	MCJ_005330	MCJ_006510	PTS system, fructose-specific IIABC component.	PUTATIVE ATP synthase C chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.	0.440
fruA	pacL	MCJ_005330	MCJ_005290	PTS system, fructose-specific IIABC component.	Cation-transporting P-type ATPase.	0.496
fruA	pdhD	MCJ_005330	MCJ_000700	PTS system, fructose-specific IIABC component.	Dihydrolipoamide dehydrogenase.	0.671
fruA	pdhD-1	MCJ_005330	MCJ_005300	PTS system, fructose-specific IIABC component.	Dihydrolipoamide dehydrogenase.	0.699
gmk	dnaK	MCJ_006290	MCJ_006260	Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.	Chaperone protein dnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.764