A0A0E0JGV3 protein (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0JGV3

Pyruvate carboxyltransferase domain-containing protein. (244 aa)

Predicted Functional Partners:

A0A0E0K333

0.973

A0A0E0LXZ0

0.973

A0A0E0K6W8

0.969

A0A0E0M8C4

0.969

A0A0E0MPE5

0.956

A0A0E0K7Z9

0.952

A0A0E0LXL1

0.931

A0A0E0M3J3

0.931

A0A0E0JH11

0.925

A0A0E0K1X2

0.925

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0E0JGV3	A0A0E0JH11	Pyruvate carboxyltransferase domain-containing protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.925
A0A0E0JGV3	A0A0E0K1X2	Pyruvate carboxyltransferase domain-containing protein.	Iso_dh domain-containing protein.	0.925
A0A0E0JGV3	A0A0E0K333	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.973
A0A0E0JGV3	A0A0E0K6W8	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.969
A0A0E0JGV3	A0A0E0K7Z9	Pyruvate carboxyltransferase domain-containing protein.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.952
A0A0E0JGV3	A0A0E0LXL1	Pyruvate carboxyltransferase domain-containing protein.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.931
A0A0E0JGV3	A0A0E0LXZ0	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.973
A0A0E0JGV3	A0A0E0M3J3	Pyruvate carboxyltransferase domain-containing protein.	3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.	0.931
A0A0E0JGV3	A0A0E0M8C4	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.969
A0A0E0JGV3	A0A0E0MPE5	Pyruvate carboxyltransferase domain-containing protein.	Uncharacterized protein.	0.956
A0A0E0JH11	A0A0E0JGV3	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Pyruvate carboxyltransferase domain-containing protein.	0.925
A0A0E0JH11	A0A0E0K1X2	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Iso_dh domain-containing protein.	0.999
A0A0E0JH11	A0A0E0K333	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.753
A0A0E0JH11	A0A0E0LXZ0	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	Uncharacterized protein.	0.934
A0A0E0K1X2	A0A0E0JGV3	Iso_dh domain-containing protein.	Pyruvate carboxyltransferase domain-containing protein.	0.925
A0A0E0K1X2	A0A0E0JH11	Iso_dh domain-containing protein.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.999
A0A0E0K1X2	A0A0E0K333	Iso_dh domain-containing protein.	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	0.591
A0A0E0K1X2	A0A0E0LXZ0	Iso_dh domain-containing protein.	Uncharacterized protein.	0.934
A0A0E0K333	A0A0E0JGV3	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	Pyruvate carboxyltransferase domain-containing protein.	0.973
A0A0E0K333	A0A0E0JH11	Uncharacterized protein; Belongs to the enoyl-CoA hydratase/isomerase family.	Isocitrate dehydrogenase [NAD] subunit, mitochondrial.	0.753