STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0KDH6PseudoU_synth_1 domain-containing protein. (521 aa)    
Predicted Functional Partners:
A0A0E0KIY6
tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit; Required for the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. In the complex, it is required to stabilize and induce conformational changes of the catalytic subunit. Belongs to the WD repeat TRM82 family.
   
 
 0.929
A0A0E0LMY5
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
   0.844
A0A0E0JSJ9
Uncharacterized protein.
   
 0.836
A0A0E0JU72
Uncharacterized protein.
   
 0.836
A0A0E0JYS4
Uncharacterized protein.
   
 0.836
A0A0E0KE66
PUA domain-containing protein.
   
 0.836
A0A0E0KXK9
TruB_N domain-containing protein.
   
 0.836
A0A0E0LFW3
Uncharacterized protein.
   
 0.836
A0A0E0LNT2
PUA domain-containing protein.
   
 0.836
A0A0E0KM92
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
  
 
 0.749
Your Current Organism:
Oryza punctata
NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.
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