A0A0E0LCR7 protein (Oryza punctata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A0E0LCR7

Uncharacterized protein; Belongs to the cytochrome P450 family. (543 aa)

Predicted Functional Partners:

MED10

0.937

MED6

0.935

A0A0E0JWQ9

0.920

A0A0E0JDQ0

0.907

A0A0E0K4W8

0.905

A0A0E0LTX0

0.888

A0A0E0LZA1

0.888

A0A0E0K5R0

0.887

A0A0E0K5R1

0.887

A0A0E0LVS0

0.887

Your Current Organism:

Oryza punctata

NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0E0JDQ0	A0A0E0JWQ9	A0A0E0JDQ0	A0A0E0JWQ9	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0E0JDQ0	A0A0E0K4W8	A0A0E0JDQ0	A0A0E0K4W8	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A0E0JDQ0	A0A0E0LCR7	A0A0E0JDQ0	A0A0E0LCR7	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.907
A0A0E0JDQ0	A0A0E0LTX0	A0A0E0JDQ0	A0A0E0LTX0	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.988
A0A0E0JDQ0	A0A0E0LZA1	A0A0E0JDQ0	A0A0E0LZA1	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.988
A0A0E0JDQ0	MED10	A0A0E0JDQ0	A0A0E0M3Q1	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.992
A0A0E0JDQ0	MED6	A0A0E0JDQ0	A0A0E0L9C6	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.992
A0A0E0JWQ9	A0A0E0JDQ0	A0A0E0JWQ9	A0A0E0JDQ0	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A0E0JWQ9	A0A0E0K4W8	A0A0E0JWQ9	A0A0E0K4W8	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A0E0JWQ9	A0A0E0LCR7	A0A0E0JWQ9	A0A0E0LCR7	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.920
A0A0E0JWQ9	A0A0E0LTX0	A0A0E0JWQ9	A0A0E0LTX0	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.988
A0A0E0JWQ9	A0A0E0LZA1	A0A0E0JWQ9	A0A0E0LZA1	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.988
A0A0E0JWQ9	MED10	A0A0E0JWQ9	A0A0E0M3Q1	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.992
A0A0E0JWQ9	MED6	A0A0E0JWQ9	A0A0E0L9C6	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.992
A0A0E0K4W8	A0A0E0JDQ0	A0A0E0K4W8	A0A0E0JDQ0	Uncharacterized protein.	Uncharacterized protein.	0.991
A0A0E0K4W8	A0A0E0JWQ9	A0A0E0K4W8	A0A0E0JWQ9	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A0E0K4W8	A0A0E0LCR7	A0A0E0K4W8	A0A0E0LCR7	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.905
A0A0E0K4W8	A0A0E0LTX0	A0A0E0K4W8	A0A0E0LTX0	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.993
A0A0E0K4W8	A0A0E0LZA1	A0A0E0K4W8	A0A0E0LZA1	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.993
A0A0E0K4W8	MED10	A0A0E0K4W8	A0A0E0M3Q1	Uncharacterized protein.	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.996