STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0LTH5F-box domain-containing protein. (764 aa)    
Predicted Functional Partners:
A0A0E0KRN0
Ipi1_N domain-containing protein.
    
 0.679
A0A0E0MKF8
Uncharacterized protein.
   
 0.668
A0A0E0JSU3
Uncharacterized protein.
    
 0.619
A0A0E0L4Z8
Uncharacterized protein.
    
 0.619
A0A0E0LMI6
Ubiquitin-like domain-containing protein.
    
 0.619
A0A0E0LMI7
Ubiquitin-like domain-containing protein.
    
 0.619
A0A0E0LMI8
Uncharacterized protein.
    
 0.619
A0A0E0LJV9
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
    
  0.606
A0A0E0KHU7
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.577
A0A0E0JEZ4
CLP1_P domain-containing protein.
    
 0.570
Your Current Organism:
Oryza punctata
NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.