STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0E0M6N6Beta-galactosidase. (791 aa)    
Predicted Functional Partners:
A0A0E0JE46
Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.732
A0A0E0JD48
PfkB domain-containing protein.
     
 0.597
A0A0E0JM42
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
     
 0.597
A0A0E0JR42
PfkB domain-containing protein.
     
 0.597
A0A0E0K2K8
PfkB domain-containing protein.
     
 0.597
A0A0E0K966
PfkB domain-containing protein.
     
 0.597
A0A0E0KG64
PfkB domain-containing protein.
     
 0.597
A0A0E0KIT2
PfkB domain-containing protein.
     
 0.597
A0A0E0KSV7
PfkB domain-containing protein.
     
 0.597
A0A0E0L9P3
PfkB domain-containing protein; Belongs to the carbohydrate kinase PfkB family.
     
 0.597
Your Current Organism:
Oryza punctata
NCBI taxonomy Id: 4537
Other names: O. punctata, Oryza punctata Kotschy ex Steud.
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