STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1NPS5_ORYGLUroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family. (403 aa)    
Predicted Functional Partners:
I1NMB9_ORYGL
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.992
I1QKJ1_ORYGL
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
 
 
 0.992
I1NXM7_ORYGL
Uncharacterized protein.
  
 0.986
I1PMI3_ORYGL
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.986
I1PPS9_ORYGL
Uncharacterized protein.
  
 0.973
I1QMQ7_ORYGL
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.950
I1PUU8_ORYGL
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
 
  
 0.946
I1NPX4_ORYGL
TP_methylase domain-containing protein; Belongs to the precorrin methyltransferase family.
    
 0.930
I1P8B3_ORYGL
Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
   
 
 0.927
I1PRI3_ORYGL
Uncharacterized protein.
   
 
 0.908
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.