STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1NQP3_ORYGLSde2_N_Ubi domain-containing protein. (444 aa)    
Predicted Functional Partners:
I1P1S0_ORYGL
Uncharacterized protein.
   
 0.986
I1PM88_ORYGL
Uncharacterized protein.
   
 0.986
I1QFA8_ORYGL
Slu7 domain-containing protein.
   
 0.983
I1PC16_ORYGL
WD_REPEATS_REGION domain-containing protein.
    
 0.982
I1QV93_ORYGL
Uncharacterized protein.
   
 
 0.971
I1Q3J1_ORYGL
Tr-type G domain-containing protein.
   
 
 0.970
I1QCA5_ORYGL
RBR-type E3 ubiquitin transferase.
   
 0.970
I1QWS3_ORYGL
HA2 domain-containing protein.
   
 0.970
I1P3U4_ORYGL
Uncharacterized protein.
   
 0.967
I1QLU1_ORYGL
Uncharacterized protein.
    
 0.965
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.