STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1NRV0_ORYGLFCP1 homology domain-containing protein. (260 aa)    
Predicted Functional Partners:
I1P9K3_ORYGL
Uncharacterized protein.
    
 0.958
I1P313_ORYGL
Uncharacterized protein.
    
 0.935
I1P6U8_ORYGL
Uncharacterized protein.
    
 0.935
I1PNX9_ORYGL
Uncharacterized protein.
    
 0.935
I1NM69_ORYGL
Uncharacterized protein.
   
 0.889
I1PAV7_ORYGL
Uncharacterized protein.
   
 0.889
I1QA25_ORYGL
Tim44 domain-containing protein.
   
 0.869
I1P9J3_ORYGL
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.868
I1QT32_ORYGL
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.868
I1P8H1_ORYGL
Uncharacterized protein.
   
 0.863
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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