I1NVS5_ORYGL protein (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I1NVS5_ORYGL

RING-type domain-containing protein. (1921 aa)

Predicted Functional Partners:

I1NK75_ORYGL

0.959

I1R953_ORYGL

0.871

I1PUR6_ORYGL

0.859

I1QQE8_ORYGL

0.859

I1PXT9_ORYGL

0.856

I1PXU0_ORYGL

0.856

I1Q8J5_ORYGL

0.856

I1QFS9_ORYGL

0.856

I1QY10_ORYGL

0.848

I1NMW6_ORYGL

0.846

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NK75_ORYGL	I1NVS5_ORYGL	I1NK75	I1NVS5	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	RING-type domain-containing protein.	0.959
I1NMW6_ORYGL	I1NVS5_ORYGL	I1NMW6	I1NVS5	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	RING-type domain-containing protein.	0.846
I1NMW6_ORYGL	I1PUR6_ORYGL	I1NMW6	I1PUR6	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.998
I1NMW6_ORYGL	I1PXT9_ORYGL	I1NMW6	I1PXT9	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.999
I1NMW6_ORYGL	I1PXU0_ORYGL	I1NMW6	I1PXU0	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.997
I1NMW6_ORYGL	I1Q8J5_ORYGL	I1NMW6	I1Q8J5	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribos_L4_asso_C domain-containing protein.	0.999
I1NMW6_ORYGL	I1QFS9_ORYGL	I1NMW6	I1QFS9	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein.	0.998
I1NMW6_ORYGL	I1QY10_ORYGL	I1NMW6	I1QY10	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
I1NMW6_ORYGL	I1R953_ORYGL	I1NMW6	I1R953	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	Ribosomal_L2_C domain-containing protein.	0.998
I1NVS5_ORYGL	I1NK75_ORYGL	I1NVS5	I1NK75	RING-type domain-containing protein.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.959
I1NVS5_ORYGL	I1NMW6_ORYGL	I1NVS5	I1NMW6	RING-type domain-containing protein.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.846
I1NVS5_ORYGL	I1PUR6_ORYGL	I1NVS5	I1PUR6	RING-type domain-containing protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.859
I1NVS5_ORYGL	I1PXT9_ORYGL	I1NVS5	I1PXT9	RING-type domain-containing protein.	Uncharacterized protein.	0.856
I1NVS5_ORYGL	I1PXU0_ORYGL	I1NVS5	I1PXU0	RING-type domain-containing protein.	Uncharacterized protein.	0.856
I1NVS5_ORYGL	I1Q8J5_ORYGL	I1NVS5	I1Q8J5	RING-type domain-containing protein.	Ribos_L4_asso_C domain-containing protein.	0.856
I1NVS5_ORYGL	I1QFS9_ORYGL	I1NVS5	I1QFS9	RING-type domain-containing protein.	Uncharacterized protein.	0.856
I1NVS5_ORYGL	I1QQE8_ORYGL	I1NVS5	I1QQE8	RING-type domain-containing protein.	Uncharacterized protein.	0.859
I1NVS5_ORYGL	I1QY10_ORYGL	I1NVS5	I1QY10	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.848
I1NVS5_ORYGL	I1R953_ORYGL	I1NVS5	I1R953	RING-type domain-containing protein.	Ribosomal_L2_C domain-containing protein.	0.871
I1PUR6_ORYGL	I1NMW6_ORYGL	I1PUR6	I1NMW6	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.	0.998