STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1NYB4_ORYGLCRAL-TRIO domain-containing protein. (327 aa)    
Predicted Functional Partners:
I1QX03_ORYGL
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
     
 0.501
I1R398_ORYGL
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
     
 0.501
I1P8Y5_ORYGL
CRAL-TRIO domain-containing protein.
  
 
 
 0.485
I1QRH2_ORYGL
C2H2-type domain-containing protein.
  
 
  0.461
I1NUN0_ORYGL
AP-4 complex subunit epsilon; AP-4 forms a non clathrin-associated coat on vesicles departing the trans-Golgi network (TGN) and may be involved in the targeting of proteins from the trans-Golgi network (TGN) to the endosomal-lysosomal system; Belongs to the adaptor complexes large subunit family.
    
 0.439
I1P5A8_ORYGL
GAE domain-containing protein.
    
 0.439
I1P5A9_ORYGL
Adaptin_N domain-containing protein.
    
 0.439
I1PZV4_ORYGL
AP-1 complex subunit gamma.
    
 0.439
I1QRD5_ORYGL
Uncharacterized protein.
  
 
  0.416
I1PG45_ORYGL
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.408
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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