STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1P6F4_ORYGL40S ribosomal protein S27. (86 aa)    
Predicted Functional Partners:
I1P7Y0_ORYGL
Uncharacterized protein.
   
 0.981
I1P0I3_ORYGL
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
   
 0.977
I1R3L2_ORYGL
Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.
   
 0.977
I1Q8J5_ORYGL
Ribos_L4_asso_C domain-containing protein.
   
 0.967
I1QFS9_ORYGL
Uncharacterized protein.
   
 
 0.955
I1PXT9_ORYGL
Uncharacterized protein.
   
 
 0.953
I1PUR6_ORYGL
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 
 0.952
I1P567_ORYGL
Uncharacterized protein.
   
 
 0.948
I1Q8G2_ORYGL
Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.
   
 0.945
I1PCE2_ORYGL
Uncharacterized protein.
   
 0.942
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.