STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1PHG4_ORYGLCBFD_NFYB_HMF domain-containing protein. (302 aa)    
Predicted Functional Partners:
I1QRF1_ORYGL
CBFD_NFYB_HMF domain-containing protein.
    
 0.980
I1P0P1_ORYGL
DNA polymerase epsilon catalytic subunit; DNA polymerase II participates in chromosomal DNA replication; Belongs to the DNA polymerase type-B family.
    
 0.896
I1PSP8_ORYGL
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
     
 0.849
I1QJD2_ORYGL
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
     
 0.849
I1QRJ6_ORYGL
Uncharacterized protein.
     
 0.849
I1Q867_ORYGL
Uncharacterized protein.
    
 0.709
I1NSY2_ORYGL
CBFD_NFYB_HMF domain-containing protein.
   
 0.622
I1PC90_ORYGL
CBFD_NFYB_HMF domain-containing protein.
   
 0.622
I1PWE8_ORYGL
CBFD_NFYB_HMF domain-containing protein.
   
 0.622
I1QC14_ORYGL
CBFD_NFYB_HMF domain-containing protein.
   
 0.622
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.