I1PN86_ORYGL protein (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I1PN86_ORYGL

FeThRed_A domain-containing protein. (164 aa)

Predicted Functional Partners:

I1QMA7_ORYGL

0.939

I1NUK3_ORYGL

0.856

I1PNA2_ORYGL

0.724

I1QKG4_ORYGL

0.721

I1P9H2_ORYGL

0.635

I1P9T9_ORYGL

0.635

I1PZB9_ORYGL

0.635

I1QNH2_ORYGL

0.635

I1QSV0_ORYGL

0.635

I1R4N4_ORYGL

0.616

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NUK3_ORYGL	I1PN86_ORYGL	I1NUK3	I1PN86	Thioredoxin domain-containing protein.	FeThRed_A domain-containing protein.	0.856
I1NUK3_ORYGL	I1PNA2_ORYGL	I1NUK3	I1PNA2	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.738
I1NUK3_ORYGL	I1QKG4_ORYGL	I1NUK3	I1QKG4	Thioredoxin domain-containing protein.	Uncharacterized protein.	0.500
I1NUK3_ORYGL	I1QMA7_ORYGL	I1NUK3	I1QMA7	Thioredoxin domain-containing protein.	Ferredoxin-thioredoxin reductase, catalytic chain; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.	0.868
I1NUK3_ORYGL	I1R4N4_ORYGL	I1NUK3	I1R4N4	Thioredoxin domain-containing protein.	Thioredoxin domain-containing protein.	0.805
I1P9H2_ORYGL	I1P9T9_ORYGL	I1P9H2	I1P9T9	Uncharacterized protein.	Uncharacterized protein.	0.900
I1P9H2_ORYGL	I1PN86_ORYGL	I1P9H2	I1PN86	Uncharacterized protein.	FeThRed_A domain-containing protein.	0.635
I1P9H2_ORYGL	I1QKG4_ORYGL	I1P9H2	I1QKG4	Uncharacterized protein.	Uncharacterized protein.	0.598
I1P9H2_ORYGL	I1QNH2_ORYGL	I1P9H2	I1QNH2	Uncharacterized protein.	Uncharacterized protein.	0.898
I1P9T9_ORYGL	I1P9H2_ORYGL	I1P9T9	I1P9H2	Uncharacterized protein.	Uncharacterized protein.	0.900
I1P9T9_ORYGL	I1PN86_ORYGL	I1P9T9	I1PN86	Uncharacterized protein.	FeThRed_A domain-containing protein.	0.635
I1P9T9_ORYGL	I1PZB9_ORYGL	I1P9T9	I1PZB9	Uncharacterized protein.	Uncharacterized protein.	0.899
I1P9T9_ORYGL	I1QKG4_ORYGL	I1P9T9	I1QKG4	Uncharacterized protein.	Uncharacterized protein.	0.598
I1P9T9_ORYGL	I1QNH2_ORYGL	I1P9T9	I1QNH2	Uncharacterized protein.	Uncharacterized protein.	0.914
I1P9T9_ORYGL	I1QSV0_ORYGL	I1P9T9	I1QSV0	Uncharacterized protein.	Uncharacterized protein.	0.900
I1PN86_ORYGL	I1NUK3_ORYGL	I1PN86	I1NUK3	FeThRed_A domain-containing protein.	Thioredoxin domain-containing protein.	0.856
I1PN86_ORYGL	I1P9H2_ORYGL	I1PN86	I1P9H2	FeThRed_A domain-containing protein.	Uncharacterized protein.	0.635
I1PN86_ORYGL	I1P9T9_ORYGL	I1PN86	I1P9T9	FeThRed_A domain-containing protein.	Uncharacterized protein.	0.635
I1PN86_ORYGL	I1PNA2_ORYGL	I1PN86	I1PNA2	FeThRed_A domain-containing protein.	Thioredoxin domain-containing protein.	0.724
I1PN86_ORYGL	I1PZB9_ORYGL	I1PN86	I1PZB9	FeThRed_A domain-containing protein.	Uncharacterized protein.	0.635