STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1PNC0_ORYGLUncharacterized protein; Belongs to the DEAD box helicase family. (498 aa)    
Predicted Functional Partners:
I1PC57_ORYGL
Uncharacterized protein.
   
 0.978
I1QTZ8_ORYGL
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
  
 0.978
I1P5C0_ORYGL
Nudix hydrolase domain-containing protein.
   
 0.969
LSM4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.950
I1QFR5_ORYGL
Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing.
    
 0.939
I1PH55_ORYGL
Uncharacterized protein.
   
 0.927
I1Q9F8_ORYGL
WH1 domain-containing protein.
   
 0.927
I1QXT8_ORYGL
WH1 domain-containing protein.
   
 0.927
I1R476_ORYGL
Uncharacterized protein.
   
 0.927
I1P6L4_ORYGL
Uncharacterized protein.
   
 0.920
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.