I1PYV7_ORYGL protein (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I1PYV7_ORYGL

Uncharacterized protein. (392 aa)

Predicted Functional Partners:

I1QDX1_ORYGL

0.875

I1NKX9_ORYGL

0.868

I1PLD1_ORYGL

0.863

I1PZM3_ORYGL

0.785

I1P7J3_ORYGL

0.742

I1NRR9_ORYGL

0.678

I1PQJ7_ORYGL

0.648

I1NT62_ORYGL

0.641

I1PWC3_ORYGL

0.641

I1PKE6_ORYGL

0.637

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NKX9_ORYGL	I1NT62_ORYGL	I1NKX9	I1NT62	WD_REPEATS_REGION domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.811
I1NKX9_ORYGL	I1PKE6_ORYGL	I1NKX9	I1PKE6	WD_REPEATS_REGION domain-containing protein.	CSN5_C domain-containing protein.	0.586
I1NKX9_ORYGL	I1PQJ7_ORYGL	I1NKX9	I1PQJ7	WD_REPEATS_REGION domain-containing protein.	MPN domain-containing protein.	0.648
I1NKX9_ORYGL	I1PWC3_ORYGL	I1NKX9	I1PWC3	WD_REPEATS_REGION domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.811
I1NKX9_ORYGL	I1PYV7_ORYGL	I1NKX9	I1PYV7	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.868
I1NKX9_ORYGL	I1PZM3_ORYGL	I1NKX9	I1PZM3	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.974
I1NKX9_ORYGL	I1QDX1_ORYGL	I1NKX9	I1QDX1	WD_REPEATS_REGION domain-containing protein.	RING-type domain-containing protein.	0.993
I1NRR9_ORYGL	I1PYV7_ORYGL	I1NRR9	I1PYV7	Uncharacterized protein.	Uncharacterized protein.	0.678
I1NT62_ORYGL	I1NKX9_ORYGL	I1NT62	I1NKX9	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	WD_REPEATS_REGION domain-containing protein.	0.811
I1NT62_ORYGL	I1PQJ7_ORYGL	I1NT62	I1PQJ7	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	MPN domain-containing protein.	0.432
I1NT62_ORYGL	I1PWC3_ORYGL	I1NT62	I1PWC3	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.869
I1NT62_ORYGL	I1PYV7_ORYGL	I1NT62	I1PYV7	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.641
I1NT62_ORYGL	I1PZM3_ORYGL	I1NT62	I1PZM3	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.595
I1NT62_ORYGL	I1QDX1_ORYGL	I1NT62	I1QDX1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RING-type domain-containing protein.	0.981
I1P7J3_ORYGL	I1PKE6_ORYGL	I1P7J3	I1PKE6	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	CSN5_C domain-containing protein.	0.552
I1P7J3_ORYGL	I1PQJ7_ORYGL	I1P7J3	I1PQJ7	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	MPN domain-containing protein.	0.707
I1P7J3_ORYGL	I1PYV7_ORYGL	I1P7J3	I1PYV7	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Uncharacterized protein.	0.742
I1P7J3_ORYGL	I1PZM3_ORYGL	I1P7J3	I1PZM3	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	Ubiquitin-like domain-containing protein.	0.855
I1P7J3_ORYGL	I1QDX1_ORYGL	I1P7J3	I1QDX1	Cyclin-dependent kinases regulatory subunit; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.	RING-type domain-containing protein.	0.957
I1PKE6_ORYGL	I1NKX9_ORYGL	I1PKE6	I1NKX9	CSN5_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.586