STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1Q836_ORYGLC3HC-type domain-containing protein. (959 aa)    
Predicted Functional Partners:
I1QDX1_ORYGL
RING-type domain-containing protein.
    
 0.651
I1PYB4_ORYGL
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
   
 
  0.579
I1NWA4_ORYGL
Skp1_POZ domain-containing protein; Belongs to the SKP1 family.
    
  0.424
I1NYM7_ORYGL
Skp1 domain-containing protein.
    
  0.424
I1P6N7_ORYGL
Uncharacterized protein.
    
  0.424
I1PYV7_ORYGL
Uncharacterized protein.
    
  0.424
I1PYW4_ORYGL
Uncharacterized protein.
    
  0.424
I1PYW6_ORYGL
Uncharacterized protein.
    
  0.424
I1PYW8_ORYGL
Skp1 domain-containing protein; Belongs to the SKP1 family.
    
  0.424
I1PYW9_ORYGL
Uncharacterized protein; Belongs to the SKP1 family.
    
  0.424
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.