STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1QE36_ORYGLXyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family. (312 aa)    
Predicted Functional Partners:
I1NZ76_ORYGL
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.900
I1R1M0_ORYGL
Uncharacterized protein.
    
 
 0.826
I1R6K1_ORYGL
Uncharacterized protein.
    
 
 0.826
I1P9C5_ORYGL
Uncharacterized protein.
   
 
 0.799
I1PGD9_ORYGL
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.799
I1QSB5_ORYGL
Uncharacterized protein.
   
 
 0.799
I1Q6W7_ORYGL
PSII_BNR domain-containing protein.
    
 0.729
I1NVP3_ORYGL
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.699
I1QX03_ORYGL
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.671
I1R398_ORYGL
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.671
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.