STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I1R3V4_ORYGLDsbD domain-containing protein. (362 aa)    
Predicted Functional Partners:
OrsajCp087
Cytochrome c biogenesis protein CcsA; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
  
  
 0.889
I1PFW3_ORYGL
Uncharacterized protein.
  
  
 0.714
I1NY78_ORYGL
Uncharacterized protein.
  
    0.670
I1PUB7_ORYGL
Uncharacterized protein.
  
    0.670
I1QJD7_ORYGL
Uncharacterized protein.
  
    0.670
I1QCU2_ORYGL
Thioredoxin reductase.
  
  
 0.602
I1QE72_ORYGL
Thioredoxin reductase.
  
  
 0.602
I1PFV0_ORYGL
Thioredoxin domain-containing protein.
  
  
 0.580
I1Q0A3_ORYGL
Thioredoxin domain-containing protein.
  
  
 0.565
I1NZD1_ORYGL
Cytochrome c-type biogenesis protein.
     
 0.511
Your Current Organism:
Oryza glaberrima
NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.