I1R717_ORYGL protein (Oryza glaberrima) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I1R717_ORYGL

Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (955 aa)

Predicted Functional Partners:

I1P5E3_ORYGL

0.793

I1PA27_ORYGL

0.767

I1QKD8_ORYGL

0.767

I1NKN2_ORYGL

0.608

I1NKQ9_ORYGL

0.608

I1P061_ORYGL

0.608

I1P0K0_ORYGL

0.608

I1P0K1_ORYGL

0.608

I1P0K3_ORYGL

0.608

I1P0K4_ORYGL

0.608

Your Current Organism:

Oryza glaberrima

NCBI taxonomy Id: 4538
Other names: African rice, O. glaberrima, Oryza glaberrima Steud.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I1NKN2_ORYGL	I1NKQ9_ORYGL	I1NKN2	I1NKQ9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.634
I1NKN2_ORYGL	I1P061_ORYGL	I1NKN2	I1P061	Uncharacterized protein.	Uncharacterized protein.	0.603
I1NKN2_ORYGL	I1P0K0_ORYGL	I1NKN2	I1P0K0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.603
I1NKN2_ORYGL	I1P0K1_ORYGL	I1NKN2	I1P0K1	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.721
I1NKN2_ORYGL	I1P0K3_ORYGL	I1NKN2	I1P0K3	Uncharacterized protein.	Uncharacterized protein.	0.630
I1NKN2_ORYGL	I1P0K4_ORYGL	I1NKN2	I1P0K4	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.632
I1NKN2_ORYGL	I1R717_ORYGL	I1NKN2	I1R717	Uncharacterized protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.608
I1NKQ9_ORYGL	I1NKN2_ORYGL	I1NKQ9	I1NKN2	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.634
I1NKQ9_ORYGL	I1P061_ORYGL	I1NKQ9	I1P061	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.603
I1NKQ9_ORYGL	I1P0K0_ORYGL	I1NKQ9	I1P0K0	ANK_REP_REGION domain-containing protein.	TPR_REGION domain-containing protein.	0.603
I1NKQ9_ORYGL	I1P0K1_ORYGL	I1NKQ9	I1P0K1	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.637
I1NKQ9_ORYGL	I1P0K3_ORYGL	I1NKQ9	I1P0K3	ANK_REP_REGION domain-containing protein.	Uncharacterized protein.	0.629
I1NKQ9_ORYGL	I1P0K4_ORYGL	I1NKQ9	I1P0K4	ANK_REP_REGION domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.627
I1NKQ9_ORYGL	I1R717_ORYGL	I1NKQ9	I1R717	ANK_REP_REGION domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.608
I1P061_ORYGL	I1NKN2_ORYGL	I1P061	I1NKN2	Uncharacterized protein.	Uncharacterized protein.	0.603
I1P061_ORYGL	I1NKQ9_ORYGL	I1P061	I1NKQ9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.603
I1P061_ORYGL	I1P0K0_ORYGL	I1P061	I1P0K0	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.603
I1P061_ORYGL	I1P0K1_ORYGL	I1P061	I1P0K1	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.603
I1P061_ORYGL	I1P0K3_ORYGL	I1P061	I1P0K3	Uncharacterized protein.	Uncharacterized protein.	0.603
I1P061_ORYGL	I1P0K4_ORYGL	I1P061	I1P0K4	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.603