Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lisr_0004 | Lisr_0045 | Lisr_0004 | Lisr_0045 | Hypothetical protein. | Putative lyase. | 0.591 |
Lisr_0004 | Lisr_0050 | Lisr_0004 | Lisr_0050 | Hypothetical protein. | D-xylose reductase III. | 0.477 |
Lisr_0004 | Lisr_0051 | Lisr_0004 | Lisr_0051 | Hypothetical protein. | AraC family transcriptional regulator. | 0.513 |
Lisr_0004 | polA | Lisr_0004 | Lisr_1500 | Hypothetical protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.742 |
Lisr_0004 | sodC | Lisr_0004 | Lisr_2531 | Hypothetical protein. | Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.413 |
Lisr_0004 | tdh | Lisr_0004 | Lisr_0921 | Hypothetical protein. | Threonine(-3-)dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. | 0.550 |
Lisr_0045 | Lisr_0004 | Lisr_0045 | Lisr_0004 | Putative lyase. | Hypothetical protein. | 0.591 |
Lisr_0045 | Lisr_0050 | Lisr_0045 | Lisr_0050 | Putative lyase. | D-xylose reductase III. | 0.481 |
Lisr_0049 | Lisr_0050 | Lisr_0049 | Lisr_0050 | Hypothetical protein. | D-xylose reductase III. | 0.559 |
Lisr_0049 | Lisr_0051 | Lisr_0049 | Lisr_0051 | Hypothetical protein. | AraC family transcriptional regulator. | 0.409 |
Lisr_0050 | Lisr_0004 | Lisr_0050 | Lisr_0004 | D-xylose reductase III. | Hypothetical protein. | 0.477 |
Lisr_0050 | Lisr_0045 | Lisr_0050 | Lisr_0045 | D-xylose reductase III. | Putative lyase. | 0.481 |
Lisr_0050 | Lisr_0049 | Lisr_0050 | Lisr_0049 | D-xylose reductase III. | Hypothetical protein. | 0.559 |
Lisr_0050 | Lisr_0051 | Lisr_0050 | Lisr_0051 | D-xylose reductase III. | AraC family transcriptional regulator. | 0.622 |
Lisr_0050 | Lisr_1026 | Lisr_0050 | Lisr_1026 | D-xylose reductase III. | Serine protein kinase. | 0.670 |
Lisr_0050 | Lisr_1898 | Lisr_0050 | Lisr_1898 | D-xylose reductase III. | OsmC-like protein (Osmotically inducible protein C). | 0.522 |
Lisr_0050 | Lisr_1931 | Lisr_0050 | Lisr_1931 | D-xylose reductase III. | Intracellular protease/amidase. | 0.477 |
Lisr_0050 | polA | Lisr_0050 | Lisr_1500 | D-xylose reductase III. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.442 |
Lisr_0050 | sodC | Lisr_0050 | Lisr_2531 | D-xylose reductase III. | Superoxide dismutase [Cu-Zn] precursor; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. | 0.551 |
Lisr_0050 | tdh | Lisr_0050 | Lisr_0921 | D-xylose reductase III. | Threonine(-3-)dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. | 0.474 |
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